PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00703.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 282aa    MW: 31717.2 Da    PI: 8.8497
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00703.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-302777151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Pahal.C00703.1 27 KRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 77
                    79***********************************************95 PP

2K-box101.31.3e-331001938100
           K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       le + ++++qqe+akL+++i++Lq+++Rhl+G+++e+LslkeL+qLe++Lek+++kiR++K+ell ++i+++ k+e elq+++++Lr+k+ee
  Pahal.C00703.1 100 PlLELNAQQYYQQESAKLRNQIQMLQNTNRHLVGDSVENLSLKELKQLESRLEKGISKIRARKSELLSAEINYMVKRETELQNDHMNLRTKIEE 193
                     45677889************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-411978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.5431979IPR002100Transcription factor, MADS-box
CDDcd002651.62E-442096No hitNo description
SuperFamilySSF554551.7E-322093IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-322141IPR002100Transcription factor, MADS-box
PfamPF003191.8E-262875IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-324156IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-325677IPR002100Transcription factor, MADS-box
PfamPF014863.8E-24105191IPR002487Transcription factor, K-box
PROSITE profilePS5129714.983107197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048283Biological Processindeterminate inflorescence morphogenesis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MREESFLLLA NQLAEISSMG RGRIEIKRIE NNTSRQVTFC KRRNGLLKKA YELSVLCDAE  60
VALIVFSSRG RLYEYSNNSV KATIERYKKA HAVGSSSGAP LLELNAQQYY QQESAKLRNQ  120
IQMLQNTNRH LVGDSVENLS LKELKQLESR LEKGISKIRA RKSELLSAEI NYMVKRETEL  180
QNDHMNLRTK IEEGEQQLQQ VTVARSAAVA AASAELNPFF QMDTKCFFPA GPFAGLDMKC  240
FFPGGLQMLE AHRQILTTEL NLGYQLAPPS GDDGINNPHQ F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-191987169Myocyte-specific enhancer factor 2B
1tqe_Q3e-191987169Myocyte-specific enhancer factor 2B
1tqe_R3e-191987169Myocyte-specific enhancer factor 2B
1tqe_S3e-191987169Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU315220.0U31522.1 Zea Mays MADS box protein (ZmOV23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960786.11e-180PREDICTED: MADS-box transcription factor 13-like
SwissprotQ2QW531e-126MAD13_ORYSJ; MADS-box transcription factor 13
TrEMBLK3Z8W11e-180K3Z8W1_SETIT; Uncharacterized protein
STRINGSi022981m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.14e-82MIKC_MADS family protein